RAPID COMMUNICATION
First identification of tomato leaf curl Palampur virus in Oman: detection and characterization
1
Department of Plant Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, Al-Khod, Oman
A - Research concept and design; B - Collection and/or assembly of data; C - Data analysis and interpretation; D - Writing the article; E - Critical revision of the article; F - Final approval of article
Submission date: 2022-02-02
Acceptance date: 2022-07-25
Online publication date: 2022-08-06
Corresponding author
Muhammad Shafiq Shahid
Department of Plant Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, Al-Khod, Oman
Department of Plant Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, Al-Khod, Oman
Journal of Plant Protection Research 2022;62(3):295-301
HIGHLIGHTS
- Detection of tomato leaf curl Palampur virus
- Molecular characterization of the virus
- Introduction of ToLCPlV into new regions
KEYWORDS
TOPICS
ABSTRACT
The complete genome sequence of tomato leaf curl Palampur virus (ToLCPlV), that infects
a papaya (Carica papaya) plant, was determined. The virus genome was composed of
2,756 and 2,719 nucleotides (nt) in length, encoding all proteins required for replication,
encapsidation and movement with the genome features typical of a bipartite begomovirus.
Pairwise identity, derived using the Sequence Demarcation Tool (SDT), identified that the
virus DNA A and DNA B shared maximum sequence identity 98–99% corresponding to
the DNA A of ToLCPlV ([IR: Jir-T65X:08] JF501720) and 96–98% to the cognate partner
DNA B of ToLCPlV ([IR: Jir1:T55P:07] FJ660423), respectively. The evolutionary relation
using phylogenetic dendrograms of DNA A and DNA B genome components were clustered
with ToLCPlV genomes of DNA A and DNA B of Iranian isolates. This study provides
the first evidence of a bipartite ToLCPlV infecting papaya in the Sultanate of Oman and
also indicates the requirement for more surveillance of this virus in Oman, as ToLCPlV is
a major threat to tomato and other vegetable crops in South Asia (India and Pakistan) and
in Iran.
ACKNOWLEDGEMENTS
The authors are grateful to SQU for providing funds
under internal grant (IG/AGR/CROP/20/02) to MS
Shahid.
FUNDING
grant (IG/AGR/CROP/20/02)
RESPONSIBLE EDITOR
Julia Minicka
CONFLICT OF INTEREST
The authors have declared that no conflict of interests exist.
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| eISSN: | 1899-007X |
| ISSN: | 1427-4345 |
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